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Compounding and Retail Pharmacies: What's the Difference?

Compounding Basics
Compounding Basics
Ryan Dyer, RPh.
Updated on
10/6/2026 9:05 AM
•
10 min read
Pharmacist reviewedMedically reviewed by
Ryan Dyer, RPh.
Compounding and Retail Pharmacies: What's the Difference?
In this post, we'll discuss the difference between a compounding pharmacy and a retail pharmacy.
Ryan Dyer, RPh.
false
September 1, 2026
Patients
Key takeaways
  • A compounding pharmacy prepares medications on a prescriber's written order.
  • Retail pharmacies dispense manufactured products rather than preparing them.
  • Compounded preparations are not FDA-approved.
  • Section 503A pharmacies compound for one named patient.
  • Compounded prescriptions are usually not billed through insurance.
In this article

A compounding pharmacy prepares a medication from individual ingredients on a prescriber's written order, instead of dispensing a product that arrived from a manufacturer already finished. A retail pharmacy dispenses those manufactured products. Bayview Pharmacy in Warwick, Rhode Island has worked as a compounding pharmacy since 2006, and this page explains what compounding is, what the law allows a compounding pharmacy to make, and where the line sits between the two kinds of pharmacy.

What is a compounding pharmacy?

Compounding is the preparation of a medication for one patient, in the strength, dose form and ingredient list the prescriber specified. A pharmacist starts with pharmaceutical grade ingredients, prepares the finished item in the pharmacy, and labels it for that named patient. Our overview of what a compounding pharmacy is and how the process works walks through each of those steps.

Every compounded preparation begins with a prescription. There is no shelf of finished compounded products waiting for a walk-in customer, because a preparation made against one person's prescription cannot be handed to someone else. To see the range of preparations Bayview keeps formulas for, start with the searchable catalog of compounded medications, which is organized by therapeutic category.

Compounded medications are not FDA-approved. FDA approves manufactured drug products after reviewing a manufacturer's data, and a preparation made one prescription at a time does not go through that review. Compounding is regulated instead through state boards of pharmacy, federal law, and United States Pharmacopeia standards.

How is a compounding pharmacy different from a retail pharmacy?

Both hold a state pharmacy license, both require a valid prescription for prescription drugs, and both are staffed by licensed pharmacists. The difference is what happens after the prescription arrives.

A retail pharmacy selects a manufactured product, labels it and counsels the patient. The tablet, capsule or cream left the factory finished, and nothing about it changes at the counter. A compounding pharmacy receives an order no manufactured product matches, and prepares it from components.

FeatureRetail pharmacyCompounding pharmacy
Product sourceManufactured, finishedPrepared per prescription
FDA statusFDA-approvedNot FDA-approved
StrengthsFixed by manufacturerSpecified by prescriber
Dose formsAs manufacturedLiquid, cream, capsule, suppository
IngredientsFixed formulaDyes, fillers can be excluded
PrescriptionRequired for RxPatient-specific, required
InsuranceUsually billedUsually not billed

Neither model replaces the other. Most people who use a compounding pharmacy still fill the rest of their prescriptions at a retail counter, and a compounded preparation is appropriate only when the prescriber decides that no manufactured product fits the patient.

What does 503A mean, and how is it different from 503B?

Section 503A of the Federal Food, Drug, and Cosmetic Act describes traditional pharmacy compounding: a licensed pharmacist prepares a medication for an identified individual patient on receipt of a valid prescription. Bayview is a 503A pharmacy. Section 503B, added by the Drug Quality and Security Act of 2013, created a separate category called an outsourcing facility.

A 503B outsourcing facility registers with FDA, may prepare batches without a patient-specific prescription, and is required to follow current good manufacturing practice. Hospitals and clinics that stock prefilled syringes or bags for office use generally buy from a 503B. A patient holding a prescription for a personalized preparation is dealing with a 503A.

Feature503A pharmacy503B facility
PrescriptionPatient-specific, requiredNot required
OversightState board of pharmacyRegistered with FDA
StandardsUSP 795, USP 797Current good manufacturing practice
Batch sizePer prescriptionLarger batches
Typical recipientIndividual patientsHospitals, clinics

The distinction matters when you read about compounding online, because rules written for outsourcing facilities are often quoted as though they governed prescription pharmacies. A side by side comparison of 503A pharmacies and 503B outsourcing facilities sets out the prescription, oversight and standards rules for each.

Why would a prescriber order a compounded medication?

The reasons are variations on one problem: the manufactured product does not fit the patient sitting in front of the prescriber. Five situations account for most compounded prescriptions.

  • The strength is not made. The prescriber wants a dose that falls between marketed strengths, or far below the lowest one.
  • The dose form does not suit the patient. A patient may not be able to swallow a capsule, or may need the drug delivered to skin, mouth, nose, eye or rectum instead of by mouth.
  • An ingredient has to come out. Dyes, lactose, gluten, alcohol, preservatives and specific flavorings can be excluded from a compounded preparation.
  • The manufactured product is discontinued or in shortage. A compounding pharmacy can prepare an alternative while the commercial supply is unavailable.
  • The patient is an animal. Species and body weight often make human dose forms unusable.

Dose form is the most common trigger. A patient who cannot swallow a capsule may instead be prescribed a liquid, and a custom oral suspension can be prepared at the concentration the prescriber specifies, including for administration through a feeding tube.

Route is the second. A drug manufactured only as a tablet can sometimes be prescribed as a cream, a rinse or a suppository when the prescriber wants it delivered where the problem is rather than through the whole body. Magic mouthwash is a familiar example of a preparation built around the route rather than the molecule.

Sublingual and buccal forms sit in the same category, and dissolve in the mouth rather than being swallowed. Our post on compounding sublingual medications goes through how troches and rapid dissolve tablets are put together.

Strength is the third. Low dose naltrexone is prepared at a small fraction of the 50 mg strength that is manufactured commercially, which is a dose no marketed tablet provides. Published work on low dose naltrexone is limited to small trials and case series, and whether it is appropriate is a prescriber's decision.

Dermatology is where several of these reasons meet at once, because a prescriber may want two or three actives in one base, at strengths chosen for the patient's skin. Compounded tacrolimus preparations can be prepared for the ear, scalp, skin or rectum, routes for which no commercial product exists.

The rest of Bayview's skin formulas sit under dermatology and skin compounding in the catalog, including acne, rosacea, pigment and hair loss bases.

If you want a longer treatment of when a dermatology prescriber reaches for a compounded base and when a commercial product is the better answer, read our introduction to dermatology compounding.

Pain management is another area where route drives the prescription. A topical pain cream combines actives in a base applied to the affected area, and the prescriber selects which actives and at what strengths. Topical delivery of these agents is off-label for most of the drugs involved.

Related preparations, including suppositories, oral concentrates and creams used in hospice settings, are grouped under pain and palliative care compounding.

Our post on compounded alternatives to opioids covers what prescribers consider when they want to avoid a systemic opioid.

Veterinary compounding is its own category, and every veterinary preparation is prescribed by a veterinarian for a specific animal. Transdermal gels for cats, flavored liquids for dogs and small-dose capsules for exotic species are all in the veterinary compounding section of the catalog.

What is the essentially a copy rule?

Section 503A does not permit a pharmacy to compound a preparation that is essentially a copy of a commercially available drug product. In practice, a pharmacy cannot simply reproduce a marketed tablet at the same strength in the same dose form because a patient would prefer to buy it that way.

The exception is a change made for an identified individual patient that, in the prescriber's determination, produces a significant difference for that patient. A dye-free version for a patient who reacts to the dye, a liquid for a patient who cannot swallow, or a strength between two marketed strengths are the usual examples, and the prescriber notes the reason on the prescription.

Drugs that FDA has placed on its drug shortage list are handled differently while the shortage lasts. Beyond that, three statutory lists shape what may be compounded at all: permitted bulk drug substances, drugs withdrawn or removed from the market for safety reasons, and preparations FDA has identified as demonstrably difficult to compound.

What can a compounding pharmacy not do?

The limits are as defining as the capabilities, and most confusion about compounding starts with assuming a pharmacy can do things it cannot.

  • Prepare or sell anything without a prescription written for a named patient.
  • Describe a compounded preparation as FDA-approved or as equivalent to a brand product.
  • Compound a drug that was withdrawn or removed from the market for safety reasons.
  • Stock finished patient preparations for over-the-counter sale.
  • Diagnose a condition, or choose a drug or a dose in place of your prescriber.

A pharmacist can talk through dose forms, bases, flavoring and ingredient exclusions with a prescriber, and often does. The decision about whether a drug is appropriate for you, and at what dose, belongs to the prescriber.

What is the difference between USP 795 and USP 797?

United States Pharmacopeia publishes general chapters that set standards for how compounding is carried out. USP 795 non-sterile compounding covers preparations such as capsules, creams, ointments, suspensions and suppositories. USP 797 covers sterile preparations, which are the ones that enter the eye, the bloodstream or another sterile site of the body.

The two categories are prepared under different conditions and by different procedures, and beyond-use dates are assigned differently for each. Sterile preparations at Bayview are compounded in our USP 797 sterile lab.

Ophthalmic preparations are the everyday example of sterile work. Low dose atropine ophthalmic drops are compounded sterile at dilute concentrations that no commercial product provides, and their use for slowing myopia progression in children is off-label and supported by controlled trials of varying size and duration.

How does a prescription reach a compounding pharmacy?

The process starts with your prescriber rather than with the pharmacy. A prescription for a compounded preparation names the active ingredients, the strengths, the dose form and the directions, because each of those is the prescriber's decision to make.

Prescribers send compounded prescriptions the same ways they send any other: electronically, by fax, or by telephone where the item allows it. If your prescriber has not written for a compounded preparation before, the pharmacy can supply a formula name and the details needed on the order.

The pharmacy confirms allergies, other medications and the intended use before preparing the order. Preparations are shipped to patients in the states where Bayview is licensed, and questions about shipping, licensure and ordering are answered on the frequently asked questions page.

What does a compounded prescription cost?

Compounded preparations are generally not billed through insurance. Because the finished preparation is made for one patient rather than assigned a national drug code as a manufactured product, most plans do not process it the way they process a commercial fill, and patients usually pay the pharmacy directly.

Price depends on the ingredients, the strength, the dose form and the quantity ordered. Each formulation page in the catalog shows a starting price, and the pharmacy can quote a specific prescription before preparing it. Many patients submit a paid receipt to a flexible spending or health savings account.

What does Bayview compound?

Bayview prepares non-sterile and sterile items on a prescriber's order across most therapeutic areas. Custom oral suspensions, including preparations intended for feeding tubes, start at $71. Magic mouthwash as an oral rinse starts at $110, low dose naltrexone capsules start at $100, and topical pain creams start at $120.

Tacrolimus preparations for otic, rectal, topical and scalp use start at $122, and atropine ophthalmic drops, compounded sterile, start at $60. Hormone, veterinary, ear nose and throat, and gastrointestinal preparations are made the same way, each in the strength and base named on the order.

Talk to your prescriber

If a manufactured medication is not working out because of the dose, the form, an ingredient in it, or because it has become unavailable, raise it with the person who prescribes for you. Bring the specific problem: what you cannot swallow, what you react to, what strength you were asked to split.

If your prescriber decides a compounded preparation is the right approach, they can send the prescription to Bayview directly, and a pharmacist will contact you before it is prepared.

Frequently asked questions

What is compounding?

Compounding is the practice of preparing a medication tailored to an individual patient's prescription. Instead of a mass-produced product, a compounding pharmacy makes the medication to the specific strength, form, or combination your provider orders.

Examples on this site include medications compounded as liquids for people who cannot swallow pills, thyroid capsules made to a T3/T4 ratio no manufactured product offers, and all-purpose nipple ointment, which combines three actives that are not sold together commercially.

How is Bayview Pharmacy different from a retail pharmacy?

Bayview Pharmacy specializes in customized medications that are not commercially available, including sterile and non-sterile compounded preparations.

Are compounded medications FDA-approved?

Compounded medications are not FDA-approved. They're prepared by a licensed pharmacy pursuant to a valid prescription for an individual patient, under USP standards. The FDA does not review compounded medications for safety or effectiveness.

Why would a provider prescribe compounded medication?

Compounding allows customization of strength, dosage form, ingredients, and combinations not available commercially.

In practice that looks like a custom oral suspension for a patient who cannot swallow a tablet, fortified eye drops at a concentration no commercial drop is made in, or a topical pain cream that puts several actives in one base. Compounded preparations are not FDA-approved and require a valid prescription.

Do I need a prescription?

Yes. All of our medications require a valid prescription from a licensed provider. We're a dispensing and compounding pharmacy, so we don't provide consultations or write prescriptions. If you don't have one yet, you'll need to find and see a provider first.

Can you fill a prescription from my own provider?

Yes. Your provider can send your prescription to Bayview Pharmacy by e-prescribe, fax, or phone, or you can transfer an existing prescription from another pharmacy.

How do providers send a prescription to Bayview?

Providers can submit a prescription three ways:

  • E-prescribe: Search Bayview Pharmacy, Warwick, RI (NCPDP 4106882) in your EHR. For compounds, use the compound, custom, or free-text option and include the full formulation, strength, quantity, refills, and directions.
  • Fax: Send a signed order to 401-284-4506 (alt. 401-210-2757) with patient and prescriber details, medication, quantity, refills, directions, signature, and date.
  • Phone: Call 401-284-4505 to submit, clarify, or coordinate refills.

A valid prescription is required, and compounded medications are not FDA-approved.

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Can you compound discontinued medications?

In many cases, yes.

Betahistine, for instance, is not manufactured in the United States at all, and cisapride is prepared for veterinary patients because no commercial version is available in North America. Whether we can prepare a particular one depends on the ingredient being available from a licensed supplier and on the drug not appearing on the FDA’s list of products withdrawn for safety reasons. Call us at 401-284-4505 and we will check before you write the prescription.

Do you compound medications that are on backorder?

Yes, when appropriate and legally permissible.

Do you follow USP compounding standards?

Yes. We follow USP 795, 797, and 800.

Do you perform sterile compounding?

Yes.

Our sterile laboratory operates under USP 797. Preparations made there include fortified gentamicin, tobramycin and vancomycin eye drops, low-dose atropine drops, and preservative-free hydromorphone infusions for hospice and palliative care.

Do you accept insurance?

Most compounded medications are not covered by insurance. We can always try and run your insurance prior to compounding your prescription if you wish.

How much do compounded medications cost?

Pricing varies depending on ingredients and formulation complexity.

What states do you ship to?

Bayview fills and ships prescriptions for patients in Rhode Island, Massachusetts, Connecticut, New Jersey, New Hampshire, Florida, Maine, and Pennsylvania.

New York: Bayview currently serves eligible New York patients on a limited basis under New York's isolated-transaction criteria. Full nonresident pharmacy registration is pending. We do not ship controlled substances to New York addresses.

If you are not sure whether your prescription is affected, call us at (401) 284-4505 and we will check before anything is prepared.

Do you compound medications for pets?

Yes. We prepare veterinary compounds for dogs and cats, including oral suspensions, topical creams and transdermal gels, with flavoring options that make a course of treatment realistic to finish.

Veterinary compounding solves much the same problems as human compounding. An animal may need a strength no commercial product offers, a dosage form it will actually accept, or a drug free of an ingredient that is unsafe for that species — xylitol, for instance, which appears in some human liquid medications and is toxic to dogs.

A compounded veterinary preparation requires a prescription from a licensed veterinarian, exactly as a human prescription does. Everything is prepared to your veterinarian’s order.

Never give an animal a medication dispensed for a person, or a person a medication dispensed for an animal. Doses and formulations are not interchangeable and some drugs that are safe for one species are dangerous in another. You can read more on our veterinary compounding page.

Preparations with their own pages include methimazole transdermal gel for cats, pimobendan and trilostane for dogs, ursodiol, and cisapride.

What Bayview compounds for this

Important: Compounded medications are prepared to a prescriber's order for an individual patient. They are not FDA-approved, and the FDA has not evaluated them for safety, effectiveness, or manufacturing quality. This article is educational and is not a substitute for advice from your prescriber or pharmacist.

This preparation contains a controlled substance. Controlled-substance prescriptions carry refill limits, must be e-prescribed, and can only be shipped to states where Bayview holds the required licensure.

Uses discussed here may be off-label, meaning they are not part of any FDA-approved labeling. Off-label use is a decision for you and your prescriber, based on the available evidence.

Veterinary preparations are compounded to a veterinarian's order for a specific animal and are not FDA-approved animal drugs. Never give a compounded human medication to an animal without veterinary direction.

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Cost & coverage

Compounded prescriptions are paid for directly rather than billed through insurance. Most are HSA/FSA-eligible, and many patients submit the receipt to their plan for possible reimbursement. Pricing depends on the strength, dose form and quantity your prescriber orders. Read more about cost and insurance.

Bayview Pharmacy is a compounding pharmacy in Warwick, Rhode Island, licensed to fill and ship compounded prescriptions for patients in Rhode Island, Massachusetts, Connecticut, New Jersey, New Hampshire, Florida, Maine and Pennsylvania. Prescriptions for New York patients are filled on a limited basis, and controlled substances are not shipped to New York addresses. See every state we ship to.

Related reading

Reviewing pharmacist
Reviewed by
Ryan Dyer, RPh.
Ryan D. Dyer, RPh, is the founder and Pharmacist in Charge of Bayview Pharmacy, with more than 20 years of experience in pharmaceutical compounding. His expertise includes patient-specific formulation development, dosage-form design, sterile compounding under USP <797>, and quality systems supporting contemporary compounding practice.
Article by
Ryan Dyer, RPh.

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